WarpX
PlasmaInjector.H
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1 /* Copyright 2019 Andrew Myers, Axel Huebl, David Grote
2  * Maxence Thevenet, Remi Lehe, Weiqun Zhang
3  *
4  *
5  * This file is part of WarpX.
6  *
7  * License: BSD-3-Clause-LBNL
8  */
9 #ifndef PLASMA_INJECTOR_H_
10 #define PLASMA_INJECTOR_H_
11 
12 #include "InjectorDensity.H"
13 #include "InjectorFlux.H"
14 #include "InjectorMomentum.H"
15 #include "TemperatureProperties.H"
16 #include "VelocityProperties.H"
18 
19 #include "InjectorPosition_fwd.H"
20 
21 #include <AMReX_Dim3.H>
22 #include <AMReX_REAL.H>
23 #include <AMReX_Vector.H>
24 
25 #include <AMReX_BaseFwd.H>
26 
27 #ifdef WARPX_USE_OPENPMD
28 # include <openPMD/openPMD.hpp>
29 #endif
30 
31 #include <limits>
32 #include <memory>
33 #include <string>
34 
41 {
42 
43 public:
44 
45  PlasmaInjector () = default;
46 
47  PlasmaInjector (int ispecies, const std::string& name, const amrex::Geometry& geom);
48 
50 
51  // bool: whether the point (x, y, z) is inside the plasma region
52  bool insideBounds (amrex::Real x, amrex::Real y, amrex::Real z) const noexcept;
53 
54  // bool: whether the region defined by lo and hi overlaps with the plasma region
55  bool overlapsWith (const amrex::XDim3& lo, const amrex::XDim3& hi) const noexcept;
56 
59 
61 
62  // gamma * beta
63  amrex::XDim3 getMomentum (amrex::Real x, amrex::Real y, amrex::Real z) const noexcept;
64 
65  amrex::Real getCharge () {return charge;}
66  amrex::Real getMass () {return mass;}
68 
69  // bool: whether the initial injection of particles should be done
70  // This routine is called during initialization of the plasma.
71  bool doInjection () const noexcept { return h_inj_pos != nullptr;}
72 
73  // bool: whether the flux injection of particles should be done.
74  bool doFluxInjection () const noexcept { return h_flux_pos != nullptr;}
75 
76  bool add_single_particle = false;
79  amrex::ParticleReal single_particle_weight;
80 
81  bool add_multiple_particles = false;
89 
90  bool gaussian_beam = false;
91  amrex::Real x_m;
92  amrex::Real y_m;
93  amrex::Real z_m;
94  amrex::Real x_rms;
95  amrex::Real y_rms;
96  amrex::Real z_rms;
97  amrex::Real x_cut = std::numeric_limits<amrex::Real>::max();
98  amrex::Real y_cut = std::numeric_limits<amrex::Real>::max();
99  amrex::Real z_cut = std::numeric_limits<amrex::Real>::max();
100  amrex::Real q_tot = 0.0;
101  long npart;
102  int do_symmetrize = 0;
104 
105  bool external_file = false;
106  amrex::Real z_shift = 0.0;
107 #ifdef WARPX_USE_OPENPMD
109  std::unique_ptr<openPMD::Series> m_openpmd_input_series;
110 #endif
111 
112  amrex::Real surface_flux_pos; // surface location
113  amrex::Real flux_tmin = -1.; // Time after which we start injecting particles
114  amrex::Real flux_tmax = -1.; // Time after which we stop injecting particles
115  // Flux normal axis represents the direction in which to emit particles
116  // When compiled in Cartesian geometry, 0 = x, 1 = y, 2 = z
117  // When compiled in cylindrical geometry, 0 = radial, 1 = azimuthal, 2 = z
119  int flux_direction; // -1 for left, +1 for right
120 
121  bool radially_weighted = true;
122 
123  std::string str_density_function;
124  std::string str_flux_function;
128 
129  amrex::Real xmin, xmax;
130  amrex::Real ymin, ymax;
131  amrex::Real zmin, zmax;
132  amrex::Real density_min = std::numeric_limits<amrex::Real>::epsilon();
133  amrex::Real density_max = std::numeric_limits<amrex::Real>::max();
134 
138 
142 
143 protected:
144 
145  amrex::Real mass, charge;
146 
148 
149  amrex::Real density;
150  amrex::Real flux;
151 
153  std::string species_name;
154 
155  std::unique_ptr<InjectorPosition> h_inj_pos;
157 
158  std::unique_ptr<InjectorPosition> h_flux_pos;
160 
161  std::unique_ptr<InjectorDensity,InjectorDensityDeleter> h_inj_rho;
163  std::unique_ptr<amrex::Parser> density_parser;
164 
165  std::unique_ptr<InjectorFlux,InjectorFluxDeleter> h_inj_flux;
167  std::unique_ptr<amrex::Parser> flux_parser;
168 
169  std::unique_ptr<InjectorMomentum,InjectorMomentumDeleter> h_inj_mom;
171  std::unique_ptr<amrex::Parser> ux_parser;
172  std::unique_ptr<amrex::Parser> uy_parser;
173  std::unique_ptr<amrex::Parser> uz_parser;
174 
175  // Keep a pointer to TemperatureProperties to ensure the lifetime of the
176  // contained Parser
177  std::unique_ptr<TemperatureProperties> h_mom_temp;
178  std::unique_ptr<VelocityProperties> h_mom_vel;
179 
180  void setupSingleParticle (const amrex::ParmParse& pp_species_name);
181  void setupMultipleParticles (const amrex::ParmParse& pp_species_name);
182  void setupGaussianBeam (const amrex::ParmParse& pp_species_name);
183  void setupNRandomPerCell (const amrex::ParmParse& pp_species_name);
184  void setupNFluxPerCell (const amrex::ParmParse& pp_species_name);
185  void setupNuniformPerCell (const amrex::ParmParse& pp_species_name);
186  void setupExternalFile (const amrex::ParmParse& pp_species_name);
187 
188  void parseDensity (const amrex::ParmParse& pp_species_name);
189  void parseFlux (const amrex::ParmParse& pp_species_name);
190  void parseMomentum (const amrex::ParmParse& pp_species_name, const std::string& style);
191 };
192 
193 #endif
PhysicalSpecies
Definition: SpeciesPhysicalProperties.H:16
Definition: PlasmaInjector.H:41
bool insideBounds(amrex::Real x, amrex::Real y, amrex::Real z) const noexcept
Definition: PlasmaInjector.cpp:782
void setupMultipleParticles(const amrex::ParmParse &pp_species_name)
Definition: PlasmaInjector.cpp:240
void setupNFluxPerCell(const amrex::ParmParse &pp_species_name)
Definition: PlasmaInjector.cpp:333
InjectorPosition * d_inj_pos
Definition: PlasmaInjector.H:156
std::unique_ptr< InjectorDensity, InjectorDensityDeleter > h_inj_rho
Definition: PlasmaInjector.H:161
PhysicalSpecies getPhysicalSpecies() const
Definition: PlasmaInjector.H:67
std::string str_momentum_function_uy
Definition: PlasmaInjector.H:126
std::string str_flux_function
Definition: PlasmaInjector.H:124
amrex::Vector< amrex::ParticleReal > multiple_particles_weight
Definition: PlasmaInjector.H:88
std::unique_ptr< InjectorMomentum, InjectorMomentumDeleter > h_inj_mom
Definition: PlasmaInjector.H:169
amrex::Real x_rms
Definition: PlasmaInjector.H:94
amrex::Vector< amrex::ParticleReal > multiple_particles_ux
Definition: PlasmaInjector.H:85
InjectorPosition * d_flux_pos
Definition: PlasmaInjector.H:159
amrex::Real z_rms
Definition: PlasmaInjector.H:96
InjectorDensity * d_inj_rho
Definition: PlasmaInjector.H:162
long npart
Definition: PlasmaInjector.H:101
amrex::Real x_m
Definition: PlasmaInjector.H:91
PlasmaInjector()=default
amrex::Vector< amrex::ParticleReal > multiple_particles_uy
Definition: PlasmaInjector.H:86
bool radially_weighted
Definition: PlasmaInjector.H:121
amrex::Vector< amrex::ParticleReal > multiple_particles_uz
Definition: PlasmaInjector.H:87
bool doFluxInjection() const noexcept
Definition: PlasmaInjector.H:74
amrex::Real x_cut
Definition: PlasmaInjector.H:97
InjectorPosition * getInjectorPosition()
Definition: PlasmaInjector.cpp:798
amrex::Vector< amrex::ParticleReal > multiple_particles_pos_x
Definition: PlasmaInjector.H:82
bool overlapsWith(const amrex::XDim3 &lo, const amrex::XDim3 &hi) const noexcept
Definition: PlasmaInjector.cpp:789
std::string str_density_function
Definition: PlasmaInjector.H:123
std::unique_ptr< amrex::Parser > uz_parser
Definition: PlasmaInjector.H:173
amrex::Real z_cut
Definition: PlasmaInjector.H:99
InjectorFlux * getInjectorFlux()
Definition: PlasmaInjector.cpp:816
amrex::Vector< amrex::ParticleReal > multiple_particles_pos_y
Definition: PlasmaInjector.H:83
void parseMomentum(const amrex::ParmParse &pp_species_name, const std::string &style)
Definition: PlasmaInjector.cpp:646
InjectorMomentum * getInjectorMomentumDevice()
Definition: PlasmaInjector.cpp:822
void setupNRandomPerCell(const amrex::ParmParse &pp_species_name)
Definition: PlasmaInjector.cpp:304
void parseFlux(const amrex::ParmParse &pp_species_name)
Definition: PlasmaInjector.cpp:609
amrex::Real q_tot
Definition: PlasmaInjector.H:100
amrex::Real flux_tmin
Definition: PlasmaInjector.H:113
bool add_multiple_particles
Definition: PlasmaInjector.H:81
amrex::XDim3 getMomentum(amrex::Real x, amrex::Real y, amrex::Real z) const noexcept
Definition: PlasmaInjector.cpp:775
void setupSingleParticle(const amrex::ParmParse &pp_species_name)
Definition: PlasmaInjector.cpp:226
amrex::Real flux_tmax
Definition: PlasmaInjector.H:114
void setupNuniformPerCell(const amrex::ParmParse &pp_species_name)
Definition: PlasmaInjector.cpp:410
std::unique_ptr< InjectorFlux, InjectorFluxDeleter > h_inj_flux
Definition: PlasmaInjector.H:165
amrex::Real xmin
Definition: PlasmaInjector.H:129
std::unique_ptr< amrex::Parser > uy_parser
Definition: PlasmaInjector.H:172
int symmetrization_order
Definition: PlasmaInjector.H:103
InjectorMomentum * getInjectorMomentumHost()
Definition: PlasmaInjector.cpp:828
std::unique_ptr< openPMD::Series > m_openpmd_input_series
additional z offset for particle positions
Definition: PlasmaInjector.H:109
amrex::Real ymax
Definition: PlasmaInjector.H:130
std::string species_name
Definition: PlasmaInjector.H:153
InjectorMomentum * d_inj_mom
Definition: PlasmaInjector.H:170
InjectorDensity * getInjectorDensity()
Definition: PlasmaInjector.cpp:810
amrex::ParticleReal single_particle_weight
Definition: PlasmaInjector.H:79
std::unique_ptr< amrex::Parser > ux_parser
Definition: PlasmaInjector.H:171
bool external_file
Definition: PlasmaInjector.H:105
InjectorPosition * getInjectorFluxPosition()
Definition: PlasmaInjector.cpp:804
amrex::Real xmax
Definition: PlasmaInjector.H:129
amrex::Real zmin
Definition: PlasmaInjector.H:131
std::unique_ptr< TemperatureProperties > h_mom_temp
Definition: PlasmaInjector.H:177
std::unique_ptr< amrex::Parser > flux_parser
Definition: PlasmaInjector.H:167
std::string str_momentum_function_uz
Definition: PlasmaInjector.H:127
int do_symmetrize
Definition: PlasmaInjector.H:102
amrex::Real y_rms
Definition: PlasmaInjector.H:95
amrex::Real ymin
Definition: PlasmaInjector.H:130
amrex::Real density_min
Definition: PlasmaInjector.H:132
void setupExternalFile(const amrex::ParmParse &pp_species_name)
Definition: PlasmaInjector.cpp:462
void parseDensity(const amrex::ParmParse &pp_species_name)
Definition: PlasmaInjector.cpp:569
amrex::Real density
Definition: PlasmaInjector.H:149
amrex::Vector< int > num_particles_per_cell_each_dim
Definition: PlasmaInjector.H:60
bool add_single_particle
Definition: PlasmaInjector.H:76
int num_particles_per_cell
Definition: PlasmaInjector.H:57
amrex::Real z_shift
initialize from an openPMD file
Definition: PlasmaInjector.H:106
amrex::Vector< amrex::ParticleReal > multiple_particles_pos_z
Definition: PlasmaInjector.H:84
bool gaussian_beam
Definition: PlasmaInjector.H:90
amrex::Real zmax
Definition: PlasmaInjector.H:131
amrex::Real z_m
Definition: PlasmaInjector.H:93
amrex::Real getMass()
Definition: PlasmaInjector.H:66
amrex::Vector< amrex::ParticleReal > single_particle_u
Definition: PlasmaInjector.H:78
void setupGaussianBeam(const amrex::ParmParse &pp_species_name)
Definition: PlasmaInjector.cpp:270
PhysicalSpecies physical_species
Definition: PlasmaInjector.H:147
bool doInjection() const noexcept
Definition: PlasmaInjector.H:71
amrex::Real getCharge()
Definition: PlasmaInjector.H:65
std::unique_ptr< InjectorPosition > h_flux_pos
Definition: PlasmaInjector.H:158
InjectorFlux * d_inj_flux
Definition: PlasmaInjector.H:166
int flux_direction
Definition: PlasmaInjector.H:119
std::unique_ptr< amrex::Parser > density_parser
Definition: PlasmaInjector.H:163
int species_id
Definition: PlasmaInjector.H:152
amrex::Real density_max
Definition: PlasmaInjector.H:133
amrex::Real charge
Definition: PlasmaInjector.H:145
amrex::Vector< amrex::ParticleReal > single_particle_pos
Definition: PlasmaInjector.H:77
amrex::Real mass
Definition: PlasmaInjector.H:145
std::unique_ptr< InjectorPosition > h_inj_pos
Definition: PlasmaInjector.H:155
amrex::Real y_cut
Definition: PlasmaInjector.H:98
amrex::Real num_particles_per_cell_real
Definition: PlasmaInjector.H:58
amrex::Real flux
Definition: PlasmaInjector.H:150
std::unique_ptr< VelocityProperties > h_mom_vel
Definition: PlasmaInjector.H:178
int flux_normal_axis
Definition: PlasmaInjector.H:118
std::string str_momentum_function_ux
Definition: PlasmaInjector.H:125
amrex::Real surface_flux_pos
Definition: PlasmaInjector.H:112
amrex::Real y_m
Definition: PlasmaInjector.H:92
name
Definition: run_automated.py:229
Definition: InjectorDensity.H:127
Definition: InjectorFlux.H:62
Definition: InjectorMomentum.H:518
Definition: InjectorPosition.H:118